Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007321.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007322.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007323.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8007324.1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| CAI8007325.1 | |
| CAI8007327.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8007330.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8007329.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8007328.1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| CAI8007326.1 | |
| CAI8007332.1 | SCC1 / RAD21 FAMILY MEMBER |
| CAI8007331.1 | SCC1 / RAD21 FAMILY MEMBER |
| CAI8007333.1 | SCC1 / RAD21 FAMILY MEMBER |
| CAI8007337.1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
| CAI8007336.1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
| CAI8007335.1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
| CAI8007334.1 | |
| CAI8007338.1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
| CAI8007339.1 | NUCLEAR SEGREGATION PROTEIN BFR1 |
| CAI8007340.1 | SECRETED PROTEIN-RELATED |
| CAI8007342.1 | SECRETED PROTEIN-RELATED |
| CAI8007341.1 | SECRETED PROTEIN-RELATED |
| CAI8007343.1 | |
| CAI8007347.1 | CHAPERONIN |
| CAI8007348.1 | CHAPERONIN |
| CAI8007346.1 | CHAPERONIN |
| CAI8007345.1 | CHAPERONIN |
| CAI8007344.1 | CHAPERONIN |
| CAI8007349.1 | CHAPERONIN |
| CAI8007350.1 | CHAPERONIN |
| CAI8007351.1 | CHAPERONIN |
| CAI8007353.1 | |
| CAI8007354.1 | |
| CAI8007352.1 | |
| CAI8007355.1 | |
| CAI8007356.1 | |
| CAI8007357.1 | UNCHARACTERIZED |
| CAI8007358.1 | |
| CAI8007359.1 | |
| CAI8007360.1 | PROFILIN |
| CAI8007361.1 | FUN14 DOMAIN CONTAINING |
| CAI8007362.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S24 |
| CAI8007363.1 | |
| CAI8007365.1 | SUPERNUMERARY LIMBS, ISOFORM B-RELATED |
| CAI8007364.1 | |
| CAI8007366.1 | |
| CAI8007367.1 | |
| CAI8007368.1 | |
| CAI8007369.1 | |
| CAI8007370.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
