Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007371.1 | MOLTING PROTEIN MLT-4 |
| CAI8007372.1 | LD41958P |
| CAI8007373.1 | LD41958P |
| CAI8007374.1 | LD41958P |
| CAI8007375.1 | LD41958P |
| CAI8007376.1 | LD41958P |
| CAI8007377.1 | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
| CAI8007378.1 | FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN |
| CAI8007379.1 | |
| CAI8007380.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8007381.1 | CORTACTIN AND DREBRIN |
| CAI8007384.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007383.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007385.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007382.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007386.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007387.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007388.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
| CAI8007391.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007390.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007389.1 | |
| CAI8007395.1 | |
| CAI8007394.1 | |
| CAI8007393.1 | |
| CAI8007396.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007392.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007397.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007398.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8007405.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007403.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007404.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007402.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007401.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007400.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007399.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007406.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8007407.1 | |
| CAI8007408.1 | BONUS, ISOFORM C-RELATED |
| CAI8007409.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8007411.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007410.1 | |
| CAI8007412.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007413.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007414.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007417.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007416.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007415.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007418.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007419.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8007420.1 | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 |
