Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007224.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007222.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007218.1 | |
| CAI8007217.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007225.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8007226.1 | YEAST SPT2-RELATED |
| CAI8007227.1 | RAD50-INTERACTING PROTEIN 1 RINT-1 |
| CAI8007229.1 | RNA-BINDING PROTEIN |
| CAI8007230.1 | RNA-BINDING PROTEIN |
| CAI8007232.1 | RNA-BINDING PROTEIN |
| CAI8007231.1 | RNA-BINDING PROTEIN |
| CAI8007228.1 | RNA-BINDING PROTEIN |
| CAI8007233.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8007234.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8007237.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007236.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007239.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007238.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007240.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007235.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
| CAI8007241.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8007242.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8007243.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8007244.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8007247.1 | WD40 REPEAT PROTEIN |
| CAI8007248.1 | WD40 REPEAT PROTEIN |
| CAI8007246.1 | WD40 REPEAT PROTEIN |
| CAI8007245.1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
| CAI8007249.1 | |
| CAI8007250.1 | WD40 REPEAT PROTEIN |
| CAI8007251.1 | WD40 REPEAT PROTEIN |
| CAI8007252.1 | |
| CAI8007253.1 | |
| CAI8007254.1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
| CAI8007255.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8007257.1 | TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER |
| CAI8007256.1 | TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER |
| CAI8007258.1 | NOTUM-RELATED |
| CAI8007260.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8007259.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8007261.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8007262.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8007263.1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| CAI8007264.1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| CAI8007268.1 | BETA-HEXOSAMINIDASE |
| CAI8007267.1 | BETA-HEXOSAMINIDASE |
| CAI8007266.1 | BETA-HEXOSAMINIDASE |
| CAI8007265.1 | BETA-HEXOSAMINIDASE |
| CAI8007269.1 | BETA-HEXOSAMINIDASE |
| CAI8007270.1 | BETA-HEXOSAMINIDASE |
