Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007521.1 | FORMAMIDASE C869.04-RELATED |
| CAI8007522.1 | |
| CAI8007523.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8007524.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8007525.1 | |
| CAI8007528.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8007527.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8007526.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8007529.1 | SPERMIDINE N(1)-ACETYLTRANSFERASE |
| CAI8007530.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI8007531.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D |
| CAI8007532.1 | |
| CAI8007534.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8007533.1 | |
| CAI8007536.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8007535.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8007537.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8007538.1 | ZGC:194242 |
| CAI8007539.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8007540.1 | HYDROLASE, HALOACID DELAHOGENASE-RELATED |
| CAI8007541.1 | OLIGOPEPTIDE/DIPEPTIDE ABC TRANSPORTER, ATPASE SUBUNIT |
| CAI8007542.1 | ABC-TYPE DIPEPTIDE/OLIGOPEPTIDE TRANSPORT SYSTEM, ATPASE COMPONENT |
| CAI8007544.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8007547.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007548.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007545.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007546.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007543.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007549.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8007550.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8007551.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8007552.1 | IDURONATE 2-SULFATASE |
| CAI8007553.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8007554.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8007555.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8007556.1 | |
| CAI8007557.1 | |
| CAI8007559.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8007558.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8007560.1 | |
| CAI8007561.1 | |
| CAI8007562.1 | GABA-B RECEPTOR |
| CAI8007563.1 | UNCHARACTERIZED |
| CAI8007564.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| CAI8007565.1 | |
| CAI8007566.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8007567.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8007568.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8007571.1 | RING FINGER PROTEIN-RELATED |
| CAI8007570.1 | RING FINGER PROTEIN-RELATED |
