Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007871.1 | |
| CAI8007872.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8007873.1 | METALLOPROTEASE |
| CAI8007874.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8007875.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8007876.1 | MOLYBDENUM COFACTOR CYTIDYLYLTRANSFERASE |
| CAI8007877.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8007878.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8007879.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8007880.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8007881.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8007882.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8007883.1 | GTPASE DER |
| CAI8007884.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8007885.1 | BLR0278 PROTEIN |
| CAI8007886.1 | |
| CAI8007887.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8007888.1 | |
| CAI8007889.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007890.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007893.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007894.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007891.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007892.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007895.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007897.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007896.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI8007898.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8007899.1 | GLYCOLATE OXIDASE SUBUNIT GLCD |
| CAI8007900.1 | D-LACTATE DEHYDROGENASE |
| CAI8007901.1 | GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT |
| CAI8007902.1 | METHYLTRANSFERASE |
| CAI8007903.1 | AMINOTRANSFERASE CLASS V |
| CAI8007905.1 | TRYPTOPHAN SYNTHASE-RELATED |
| CAI8007904.1 | TRYPTOPHAN SYNTHASE-RELATED |
| CAI8007906.1 | N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE |
| CAI8007907.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8007908.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8007909.1 | OXIDOREDUCTASE-RELATED |
| CAI8007910.1 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE 2 |
| CAI8007911.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8007912.1 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| CAI8007913.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8007914.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8007915.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8007916.1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
| CAI8007917.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8007918.1 | ATP7, ISOFORM B |
| CAI8007919.1 | ATP7, ISOFORM B |
| CAI8007920.1 |
