Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007971.1 | |
| CAI8007972.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8007973.1 | GTP CYCLOHYDROLASE I |
| CAI8007974.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8007975.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8007976.1 | |
| CAI8007977.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8007980.1 | |
| CAI8007979.1 | |
| CAI8007978.1 | GTPASE ERA |
| CAI8007981.1 | |
| CAI8007982.1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| CAI8007983.1 | |
| CAI8007984.1 | |
| CAI8007985.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8007986.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8007987.1 | |
| CAI8007988.1 | |
| CAI8007989.1 | |
| CAI8007990.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8007992.1 | ADENINE DEAMINASE |
| CAI8007991.1 | ADENINE DEAMINASE |
| CAI8007993.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8007994.1 | ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE |
| CAI8007995.1 | CEPHALOSPORIN-C DEACETYLASE |
| CAI8007996.1 | SI:DKEY-261L7.2 |
| CAI8007997.1 | |
| CAI8007998.1 | IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED |
| CAI8007999.1 | |
| CAI8008000.1 | SSL7038 PROTEIN |
| CAI8008001.1 | ATP-DEPENDENT HELICASE HRQ1 |
| CAI8008002.1 | ATP-DEPENDENT HELICASE HRQ1 |
| CAI8008003.1 | HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8008004.1 | HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8008005.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8008006.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8008007.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8008008.1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| CAI8008009.1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| CAI8008012.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8008011.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8008010.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8008013.1 | GLUTAMINE SYNTHETASE |
| CAI8008014.1 | AMMONIUM TRANSPORTER |
| CAI8008015.1 | |
| CAI8008016.1 | DICER-RELATED |
| CAI8008017.1 | |
| CAI8008018.1 | REGULATOR OF RPOS |
| CAI8008019.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8008020.1 | 30S RIBOSOMAL PROTEIN |
