Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8007721.1 | GLYCOGENIN SUBFAMILY MEMBER |
| CAI8007724.1 | INTIMAL THICKNESS RECEPTOR-RELATED |
| CAI8007723.1 | INTIMAL THICKNESS RECEPTOR-RELATED |
| CAI8007722.1 | INTIMAL THICKNESS RECEPTOR-RELATED |
| CAI8007725.1 | INTIMAL THICKNESS RECEPTOR-RELATED |
| CAI8007726.1 | |
| CAI8007727.1 | RIBONUCLEASE P PROTEIN SUBUNIT P38 |
| CAI8007728.1 | RIBONUCLEASE P PROTEIN SUBUNIT P38 |
| CAI8007729.1 | |
| CAI8007730.1 | |
| CAI8007732.1 | AAA-FAMILY ATPASE |
| CAI8007731.1 | AAA-FAMILY ATPASE |
| CAI8007733.1 | AAA-FAMILY ATPASE |
| CAI8007734.1 | ECTO-NOX DISULFIDE-THIOL EXCHANGER |
| CAI8007736.1 | CENTROMERE PROTEIN I |
| CAI8007735.1 | CENTROMERE PROTEIN I |
| CAI8007737.1 | CENTROMERE PROTEIN I |
| CAI8007738.1 | CENTROMERE PROTEIN I |
| CAI8007739.1 | |
| CAI8007741.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 39 |
| CAI8007740.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 39 |
| CAI8007744.1 | |
| CAI8007743.1 | |
| CAI8007742.1 | |
| CAI8007745.1 | DYNEIN HEAVY CHAIN |
| CAI8007748.1 | DYNEIN HEAVY CHAIN |
| CAI8007747.1 | DYNEIN HEAVY CHAIN |
| CAI8007746.1 | DYNEIN HEAVY CHAIN |
| CAI8007749.1 | DYNEIN HEAVY CHAIN |
| CAI8007750.1 | DYNEIN HEAVY CHAIN |
| CAI8007751.1 | |
| CAI8007754.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8007753.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8007752.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8007755.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8007756.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8007757.1 | F14O23.11 PROTEIN |
| CAI8007758.1 | STEROL DESATURASE |
| CAI8007759.1 | STEROL DESATURASE |
| CAI8007760.1 | PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE |
| CAI8007761.1 | PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE |
| CAI8007762.1 | PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE |
| CAI8007766.1 | DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1 |
| CAI8007765.1 | DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1 |
| CAI8007764.1 | DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1 |
| CAI8007763.1 | |
| CAI8007767.1 | |
| CAI8007768.1 | |
| CAI8007770.1 | |
| CAI8007773.1 |
