Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008170.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
| CAI8008172.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
| CAI8008173.1 | 2,4-DIENOYL-COA REDUCTASE |
| CAI8008174.1 | |
| CAI8008175.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8008176.1 | UREASE ACCESSORY PROTEIN G |
| CAI8008177.1 | |
| CAI8008179.1 | UNCHARACTERIZED |
| CAI8008181.1 | UNCHARACTERIZED |
| CAI8008180.1 | UNCHARACTERIZED |
| CAI8008178.1 | |
| CAI8008182.1 | |
| CAI8008183.1 | |
| CAI8008184.1 | |
| CAI8008185.1 | |
| CAI8008186.1 | |
| CAI8008187.1 | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED |
| CAI8008188.1 | UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN |
| CAI8008189.1 | |
| CAI8008190.1 | KELCH PROTEIN |
| CAI8008191.1 | |
| CAI8008192.1 | MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE |
| CAI8008193.1 | MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE |
| CAI8008194.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8008195.1 | - |
| CAI8008196.1 | |
| CAI8008198.1 | |
| CAI8008197.1 | |
| CAI8008199.1 | |
| CAI8008200.1 | |
| CAI8008201.1 | |
| CAI8008202.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8008210.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008205.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008206.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008209.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008207.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008208.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008204.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008203.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008211.1 | |
| CAI8008215.1 | UPSET, ISOFORM A |
| CAI8008214.1 | |
| CAI8008213.1 | |
| CAI8008212.1 | |
| CAI8008216.1 | UPSET, ISOFORM A |
| CAI8008217.1 | SYNPHILIN-1 |
| CAI8008220.1 | SYNPHILIN-1 |
| CAI8008219.1 | SYNPHILIN-1 |
| CAI8008218.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
