About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8008272.1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
CAI8008271.1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
CAI8008270.1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
CAI8008274.1EPOXIDE HYDROLASE 1-RELATED
CAI8008275.1
CAI8008276.1
CAI8008277.1
CAI8008278.1
CAI8008279.1PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
CAI8008280.1PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
CAI8008281.1
CAI8008282.1
CAI8008283.1PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE
CAI8008284.1METHYLTRANSFERASE
CAI8008285.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8008286.1CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE
CAI8008287.1ENOLASE
CAI8008288.1PYRIDOXAMINE PHOSPHATE OXIDASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G11440)
CAI8008289.1GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2
CAI8008290.1OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
CAI8008291.1VON HIPPEL-LINDAU PROTEIN
CAI8008292.1ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC
CAI8008293.1ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC
CAI8008294.1ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC
CAI8008295.1
CAI8008296.1ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL
CAI8008297.1ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC
CAI8008298.1ATP SYNTHASE DELTA CHAIN
CAI8008299.1ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
CAI8008300.1ATP SYNTHASE
CAI8008302.1REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX
CAI8008301.1REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX
CAI8008303.1FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC
CAI8008304.1
CAI8008305.1TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE
CAI8008306.1ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
CAI8008307.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI8008308.1
CAI8008310.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8008309.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8008311.12-PHOSPHO-L-LACTATE TRANSFERASE
CAI8008312.12-PHOSPHO-L-LACTATE TRANSFERASE
CAI8008313.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8008314.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8008315.1GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
CAI8008316.1-
CAI8008317.1DEHYDROGENASES, SHORT CHAIN
CAI8008318.1QUEUOSINE PRECURSOR TRANSPORTER-RELATED
CAI8008319.1SARCOSINE DEHYDROGENASE-RELATED
CAI8008320.1ALKANESULFONATE MONOOXYGENASE
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