Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008370.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8008369.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8008373.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8008374.1 | PROTEIN ABCI7, CHLOROPLASTIC |
| CAI8008375.1 | CYSTEINE DESULFURASE |
| CAI8008376.1 | CYSTEINE DESULFURASE |
| CAI8008377.1 | CYSTEINE DESULFURASE |
| CAI8008378.1 | CYSTEINE DESULFURASE |
| CAI8008379.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8008380.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8008381.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8008382.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8008383.1 | QUINOL MONOOXYGENASE YGIN-RELATED |
| CAI8008384.1 | CELL DIVISION PROTEIN DEDD-RELATED |
| CAI8008385.1 | SHIKIMATE DEHYDROGENASE |
| CAI8008386.1 | 3-DEHYDROQUINATE DEHYDRATASE |
| CAI8008387.1 | |
| CAI8008388.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8008389.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8008390.1 | |
| CAI8008391.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008392.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8008393.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8008395.1 | |
| CAI8008394.1 | |
| CAI8008396.1 | |
| CAI8008397.1 | |
| CAI8008399.1 | TENASCIN |
| CAI8008398.1 | TENASCIN |
| CAI8008400.1 | TENASCIN |
| CAI8008401.1 | |
| CAI8008402.1 | |
| CAI8008403.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8008404.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8008405.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8008406.1 | |
| CAI8008407.1 | PROTEIN ABHD11 |
| CAI8008408.1 | COBALT-PRECORRIN-2 C(20)-METHYLTRANSFERASE |
| CAI8008412.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8008411.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8008410.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8008409.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8008413.1 | POTASSIUM CHANNEL PROTEIN 2-RELATED-RELATED |
| CAI8008414.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8008415.1 | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 |
| CAI8008416.1 | ENOLASE |
| CAI8008417.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8008418.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 |
| CAI8008419.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 |
| CAI8008420.1 | PROTEIN TOLB HOMOLOG |
