Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008471.1 | |
| CAI8008472.1 | TRANSAMIDASE |
| CAI8008473.1 | |
| CAI8008474.1 | IRON-SULFUR DOMAIN CONTAINING PROTEIN |
| CAI8008475.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8008476.1 | |
| CAI8008477.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008480.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008478.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008479.1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| CAI8008481.1 | SUGAR KINASE |
| CAI8008482.1 | NEPHRIN |
| CAI8008483.1 | SUGAR KINASE |
| CAI8008486.1 | SYNAPTOBREVIN HOMOLOG YKT6 |
| CAI8008485.1 | SYNAPTOBREVIN HOMOLOG YKT6 |
| CAI8008484.1 | SYNAPTOBREVIN HOMOLOG YKT6 |
| CAI8008487.1 | |
| CAI8008488.1 | |
| CAI8008490.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008489.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008491.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008492.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8008495.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8008493.1 | CRUMBS FAMILY MEMBER |
| CAI8008494.1 | RNA BINDING PROTEIN PUMILIO-RELATED |
| CAI8008496.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| CAI8008498.1 | |
| CAI8008497.1 | |
| CAI8008499.1 | |
| CAI8008500.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8008501.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8008502.1 | DC12-RELATED |
| CAI8008503.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8008504.1 | |
| CAI8008505.1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8008507.1 | UNCHARACTERIZED |
| CAI8008506.1 | UNCHARACTERIZED |
| CAI8008508.1 | |
| CAI8008509.1 | |
| CAI8008510.1 | DUDULIN-RELATED |
| CAI8008511.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8008512.1 | GLYCOSYLTRANSFERASE WBBK-RELATED |
| CAI8008513.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8008514.1 | SLR1870 PROTEIN |
| CAI8008515.1 | AMINOTRANSFERASE CLASS V |
| CAI8008516.1 | LMO2823 PROTEIN |
| CAI8008517.1 | |
| CAI8008518.1 | |
| CAI8008519.1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| CAI8008520.1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
