About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7997964.1GLUTAMATE DEHYDROGENASE
CAI7997966.1GLUTAMATE DEHYDROGENASE
CAI7997970.1ABC TRANSPORTER ATP-BINDING PROTEIN
CAI7997972.1-
CAI7997974.1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA
CAI7997976.1SEL-1-LIKE PROTEIN
CAI7997978.1SLR6095 PROTEIN
CAI7997980.1-
CAI7997982.1MOLYBDATE-BINDING PERIPLASMIC PROTEIN
CAI7997984.1MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB
CAI7997986.1ABC TRANSPORTER I FAMILY MEMBER 10
CAI7997988.1SUGAR NUCLEOTIDE EPIMERASE RELATED
CAI7997990.1RIBONUCLEASE VAPC2
CAI7997992.1ENOLASE SUPERFAMILY, MANDELATE RACEMASE
CAI7997994.1CARBOXYMETHYLENEBUTENOLIDASE-RELATED
CAI7997996.1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
CAI7997998.1DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12
CAI7998003.1LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE
CAI7998005.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI7998007.1TRANSLATION FACTOR
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