Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008673.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8008671.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8008670.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8008675.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8008676.1 | HISTONE DEACETYLASE-LIKE PROTEIN |
| CAI8008674.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8008677.1 | BATTENIN |
| CAI8008679.1 | BATTENIN |
| CAI8008678.1 | BATTENIN |
| CAI8008680.1 | BATTENIN |
| CAI8008681.1 | BATTENIN |
| CAI8008682.1 | |
| CAI8008683.1 | |
| CAI8008684.1 | |
| CAI8008685.1 | MEMBRANE PROTEIN CH1 RELATED |
| CAI8008687.1 | MEMBRANE PROTEIN CH1 RELATED |
| CAI8008686.1 | MEMBRANE PROTEIN CH1 RELATED |
| CAI8008688.1 | MEMBRANE PROTEIN CH1 RELATED |
| CAI8008689.1 | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN |
| CAI8008691.1 | |
| CAI8008690.1 | |
| CAI8008693.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8008692.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8008694.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8008698.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008701.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008699.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008697.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008696.1 | |
| CAI8008695.1 | |
| CAI8008702.1 | |
| CAI8008700.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008703.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008704.1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
| CAI8008709.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008708.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008707.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008706.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008705.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008711.1 | DEDICATOR OF CYTOKINESIS |
| CAI8008710.1 | |
| CAI8008712.1 | REGULATOR OF G PROTEIN SIGNALING |
| CAI8008713.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8008714.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8008715.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8008716.1 | |
| CAI8008720.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI8008719.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI8008718.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI8008717.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
