About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 224 225 226 227 228 229 230 231 232 233 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI7998246.1METHYLTRANSFERASE
CAI7998244.1-
CAI7998250.1DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820)
CAI7998252.1FLAVIN PRENYLTRANSFERASE
CAI7998260.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998258.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998256.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998254.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998262.1F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C
CAI7998264.1FAD-BINDING PROTEIN
CAI7998280.1NYD-SP28 PROTEIN
CAI7998282.1NYD-SP28 PROTEIN
CAI7998284.1E3 UBIQUITIN-PROTEIN LIGASE TRIP12
CAI7998286.1HAUS AUGMIN-LIKE COMPLEX SUBUNIT 5
CAI7998288.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998290.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998292.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998294.1NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1
CAI7998296.1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
CAI7998298.1LEUCINE RICH REPEAT KINASE 2
TOP