Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008821.1 | METALLOPROTEASE |
| CAI8008822.1 | METALLOPROTEASE |
| CAI8008823.1 | |
| CAI8008824.1 | ACETOLACTATE SYNTHASE, SMALL SUBUNIT |
| CAI8008826.1 | - |
| CAI8008825.1 | - |
| CAI8008827.1 | |
| CAI8008828.1 | |
| CAI8008829.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8008830.1 | FLAP ENDONUCLEASE XNI |
| CAI8008831.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8008832.1 | SLR1927 PROTEIN-RELATED |
| CAI8008833.1 | AAA FAMILY ATPASE |
| CAI8008834.1 | MOXR FAMILY PROTEIN |
| CAI8008835.1 | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 |
| CAI8008836.1 | FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC |
| CAI8008837.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8008838.1 | REGULATOR OF RPOS |
| CAI8008839.1 | |
| CAI8008842.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8008841.1 | |
| CAI8008840.1 | |
| CAI8008843.1 | |
| CAI8008844.1 | |
| CAI8008845.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8008846.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8008847.1 | |
| CAI8008848.1 | |
| CAI8008850.1 | REGULATOR OF RPOS |
| CAI8008849.1 | REGULATOR OF RPOS |
| CAI8008853.1 | REGULATOR OF RPOS |
| CAI8008852.1 | REGULATOR OF RPOS |
| CAI8008851.1 | REGULATOR OF RPOS |
| CAI8008854.1 | REGULATOR OF RPOS |
| CAI8008855.1 | PERIPLASMIC PHOSPHATE BINDING COMPONENT OF PHOSPHATE ABC TRANSPORTER |
| CAI8008856.1 | PERIPLASMIC PHOSPHATE BINDING COMPONENT OF PHOSPHATE ABC TRANSPORTER |
| CAI8008857.1 | PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA-RELATED |
| CAI8008858.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8008859.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8008860.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8008861.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8008865.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8008863.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8008862.1 | |
| CAI8008864.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8008866.1 | |
| CAI8008867.1 | |
| CAI8008868.1 | |
| CAI8008869.1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7 |
| CAI8008870.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
