Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008871.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8008872.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8008873.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8008874.1 | |
| CAI8008875.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8008876.1 | |
| CAI8008881.1 | RNA HELICASE |
| CAI8008880.1 | RNA HELICASE |
| CAI8008879.1 | RNA HELICASE |
| CAI8008878.1 | RNA HELICASE |
| CAI8008882.1 | RNA HELICASE |
| CAI8008877.1 | |
| CAI8008883.1 | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 |
| CAI8008887.1 | E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER |
| CAI8008886.1 | |
| CAI8008885.1 | |
| CAI8008884.1 | |
| CAI8008889.1 | - |
| CAI8008888.1 | RAS-RELATED PROTEIN RAB |
| CAI8008890.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8008891.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8008892.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8008893.1 | |
| CAI8008894.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8008895.1 | DEP DOMAIN CONTAINING PROTEIN 5 |
| CAI8008898.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8008897.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8008896.1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| CAI8008899.1 | |
| CAI8008900.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
| CAI8008902.1 | |
| CAI8008901.1 | |
| CAI8008905.1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| CAI8008904.1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| CAI8008903.1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| CAI8008906.1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
| CAI8008907.1 | |
| CAI8008910.1 | |
| CAI8008909.1 | |
| CAI8008908.1 | |
| CAI8008911.1 | |
| CAI8008912.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8008913.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8008914.1 | ATP7, ISOFORM B |
| CAI8008915.1 | ATP7, ISOFORM B |
| CAI8008916.1 | ATP7, ISOFORM B |
| CAI8008917.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8008918.1 | |
| CAI8008919.1 | UNIVERSAL STRESS PROTEIN SLR1230 |
| CAI8008920.1 |
