Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008921.1 | AMIDOHYDROLASE |
| CAI8008922.1 | |
| CAI8008923.1 | GNAT FAMILY N-ACETYLTRANSFERASE |
| CAI8008924.1 | EXSB FAMILY PROTEIN |
| CAI8008925.1 | NICKEL INSERTION PROTEIN-RELATED |
| CAI8008926.1 | |
| CAI8008927.1 | CORNICHON-RELATED |
| CAI8008928.1 | GLIAL FACTOR NATURATION FACTOR |
| CAI8008931.1 | |
| CAI8008930.1 | |
| CAI8008929.1 | |
| CAI8008932.1 | |
| CAI8008933.1 | |
| CAI8008934.1 | |
| CAI8008945.1 | |
| CAI8008939.1 | |
| CAI8008942.1 | |
| CAI8008943.1 | |
| CAI8008940.1 | |
| CAI8008941.1 | |
| CAI8008938.1 | |
| CAI8008937.1 | |
| CAI8008936.1 | |
| CAI8008944.1 | |
| CAI8008946.1 | |
| CAI8008947.1 | |
| CAI8008935.1 | |
| CAI8008948.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8008952.1 | AGAP011099-PA |
| CAI8008951.1 | AGAP011099-PA |
| CAI8008950.1 | AGAP011099-PA |
| CAI8008949.1 | AGAP011099-PA |
| CAI8008953.1 | |
| CAI8008954.1 | |
| CAI8008955.1 | |
| CAI8008958.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008956.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008957.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008959.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008960.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008962.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008961.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008964.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008963.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008965.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8008966.1 | MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT |
| CAI8008970.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 |
| CAI8008969.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 |
| CAI8008968.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 |
| CAI8008967.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 |
