Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008971.1 | |
| CAI8008974.1 | |
| CAI8008973.1 | |
| CAI8008972.1 | |
| CAI8008975.1 | HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY |
| CAI8008977.1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
| CAI8008976.1 | |
| CAI8008978.1 | |
| CAI8008979.1 | |
| CAI8008981.1 | PROGESTERONE-INDUCED BLOCKING FACTOR 1 |
| CAI8008980.1 | PROGESTERONE-INDUCED BLOCKING FACTOR 1 |
| CAI8008982.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8008984.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8008983.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8008985.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8008986.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8008987.1 | HEDGEHOG-INTERACTING PROTEIN |
| CAI8008988.1 | - |
| CAI8008989.1 | HEDGEHOG-INTERACTING PROTEIN |
| CAI8008993.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008992.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008991.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008990.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008994.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008995.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8008996.1 | |
| CAI8008998.1 | SMAD |
| CAI8008997.1 | SMAD |
| CAI8008999.1 | PARTITIONING DEFECTIVE 3 RELATED |
| CAI8009000.1 | CHONDROITIN SYNTHASE |
| CAI8009005.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8009006.1 | ATP SYNTHASE |
| CAI8009002.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI8009001.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI8009003.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI8009004.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| CAI8009007.1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
| CAI8009008.1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
| CAI8009009.1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
| CAI8009010.1 | |
| CAI8009011.1 | EPH RECEPTOR A5 |
| CAI8009012.1 | |
| CAI8009013.1 | |
| CAI8009014.1 | |
| CAI8009016.1 | FERREDOXIN-RELATED |
| CAI8009015.1 | FERREDOXIN-RELATED |
| CAI8009017.1 | CTP SYNTHASE |
| CAI8009018.1 | UNCHARACTERIZED |
| CAI8009019.1 | TRANSAMIDASE |
| CAI8009020.1 | TRANSAMIDASE |
