Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009121.1 | |
| CAI8009122.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| CAI8009123.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| CAI8009126.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009127.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009128.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009125.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009124.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009129.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009130.1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| CAI8009132.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8009131.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8009133.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8009134.1 | |
| CAI8009135.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8009136.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI8009137.1 | |
| CAI8009138.1 | |
| CAI8009139.1 | |
| CAI8009140.1 | |
| CAI8009141.1 | PHP DOMAIN PROTEIN |
| CAI8009142.1 | B9 DOMAIN-CONTAINING |
| CAI8009143.1 | 39S RIBOSOMAL PROTEIN L52, MITOCHONDRIAL |
| CAI8009144.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8009145.1 | |
| CAI8009146.1 | TRANSFERASE, PUTATIVE-RELATED |
| CAI8009147.1 | RIBOSOMAL PROTEIN L13 |
| CAI8009148.1 | RIBOSOMAL PROTEIN L13 |
| CAI8009150.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI8009149.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI8009151.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI8009152.1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| CAI8009153.1 | RNA-BINDING PROTEIN RELATED |
| CAI8009154.1 | |
| CAI8009159.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8009156.1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN |
| CAI8009155.1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN |
| CAI8009157.1 | |
| CAI8009158.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8009161.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8009160.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8009163.1 | PROTEIN SIDEKICK |
| CAI8009162.1 | PROTEIN SIDEKICK |
| CAI8009164.1 | |
| CAI8009165.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_1G13630) |
| CAI8009167.1 | OPPC IN A BINDING PROTEIN-DEPENDENT TRANSPORT SYSTEM |
| CAI8009166.1 | OPPC IN A BINDING PROTEIN-DEPENDENT TRANSPORT SYSTEM |
| CAI8009168.1 | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
| CAI8009170.1 | TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED |
| CAI8009169.1 | TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED |
