About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8009173.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009171.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009172.1TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED
CAI8009174.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009175.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009176.1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
CAI8009177.1RESPIRATORY NITRATE REDUCTASE
CAI8009178.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8009179.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8009180.1PHOSPHOMETHYLPYRIMIDINE KINASE
CAI8009181.1NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED
CAI8009182.1OBG GTPASE FAMILY
CAI8009183.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8009185.12-HYDROXYACYL-COA LYASE
CAI8009184.12-HYDROXYACYL-COA LYASE
CAI8009186.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009187.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009188.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009189.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009190.1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
CAI8009191.1AMIDOHYDROLASE
CAI8009192.1MEMBRANE COMPONENT OF TRANSPORTER-RELATED
CAI8009197.1IMPORT ATP-BINDING PROTEIN
CAI8009196.1IMPORT ATP-BINDING PROTEIN
CAI8009193.1IMPORT ATP-BINDING PROTEIN
CAI8009194.1IMPORT ATP-BINDING PROTEIN
CAI8009195.1IMPORT ATP-BINDING PROTEIN
CAI8009198.1TWO-COMPONENT HISTIDINE PROTEIN KINASE
CAI8009199.1SENSOR HISTIDINE KINASE YKOH
CAI8009200.1REGULATOR OF RPOS
CAI8009201.1ARSENATE REDUCTASE
CAI8009202.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8009203.1
CAI8009204.1ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
CAI8009205.1
CAI8009206.1
CAI8009208.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009207.1TRANSPORT PROTEIN TRAPP
CAI8009209.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009210.1
CAI8009211.1
CAI8009214.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009213.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009212.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009215.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8009216.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8009217.1RAS-RELATED PROTEIN RAB
CAI8009218.1-
CAI8009219.1
CAI8009220.1THROMBOSPONDIN
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