Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009271.1 | ENDONUCLEASE RELATED |
| CAI8009274.1 | LYSYL-TRNA SYNTHETASE |
| CAI8009273.1 | LYSYL-TRNA SYNTHETASE |
| CAI8009272.1 | LYSYL-TRNA SYNTHETASE |
| CAI8009276.1 | |
| CAI8009275.1 | |
| CAI8009277.1 | |
| CAI8009278.1 | |
| CAI8009279.1 | |
| CAI8009280.1 | |
| CAI8009281.1 | |
| CAI8009283.1 | |
| CAI8009282.1 | |
| CAI8009284.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8009285.1 | UNCHARACTERIZED |
| CAI8009286.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI8009287.1 | |
| CAI8009288.1 | |
| CAI8009289.1 | |
| CAI8009291.1 | CENTROSOMAL PROTEIN-RELATED |
| CAI8009290.1 | |
| CAI8009292.1 | |
| CAI8009293.1 | |
| CAI8009295.1 | MOLTING PROTEIN MLT-4 |
| CAI8009294.1 | MOLTING PROTEIN MLT-4 |
| CAI8009296.1 | SERINE PROTEASE |
| CAI8009297.1 | SUPEROXIDE DISMUTASE 2 |
| CAI8009298.1 | SUPEROXIDE DISMUTASE 2 |
| CAI8009301.1 | |
| CAI8009299.1 | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED |
| CAI8009300.1 | |
| CAI8009302.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8009304.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8009303.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8009305.1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| CAI8009306.1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| CAI8009307.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
| CAI8009308.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8009309.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8009310.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8009311.1 | |
| CAI8009312.1 | CYCLOINULO-OLIGOSACCHARIDE FRUCTANOTRANSFERASE-RELATED |
| CAI8009313.1 | |
| CAI8009314.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8009315.1 | PROSTAGLANDIN REDUCTASE |
| CAI8009316.1 | BILIVERDIN REDUCTASE A |
| CAI8009317.1 | |
| CAI8009318.1 | 7-CARBOXY-7-DEAZAGUANINE SYNTHASE |
| CAI8009319.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8009320.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
