Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009421.1 | FLAVIN MONOAMINE OXIDASE |
| CAI8009423.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8009422.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8009425.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8009424.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8009426.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8009427.1 | UNCHARACTERIZED |
| CAI8009428.1 | |
| CAI8009430.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009429.1 | |
| CAI8009431.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009432.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009434.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009433.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009436.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009435.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009437.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009438.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8009439.1 | |
| CAI8009440.1 | |
| CAI8009441.1 | |
| CAI8009442.1 | LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8009446.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| CAI8009444.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| CAI8009447.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| CAI8009445.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| CAI8009443.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
| CAI8009448.1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
| CAI8009449.1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
| CAI8009450.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 87 |
| CAI8009451.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8009452.1 | VESICLE-ASSOCIATED MEMBRANE PROTEIN 4 |
| CAI8009453.1 | VESICLE-ASSOCIATED MEMBRANE PROTEIN 4 |
| CAI8009454.1 | |
| CAI8009455.1 | GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG |
| CAI8009456.1 | |
| CAI8009457.1 | |
| CAI8009458.1 | |
| CAI8009459.1 | RIBOSOMAL PROTEIN S7 |
| CAI8009460.1 | |
| CAI8009461.1 | |
| CAI8009462.1 | ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 |
| CAI8009463.1 | |
| CAI8009464.1 | |
| CAI8009465.1 | |
| CAI8009466.1 | |
| CAI8009467.1 | |
| CAI8009469.1 | ANKYRIN REPEAT CONTAINING |
| CAI8009468.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8009470.1 |
