Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009519.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8009522.1 | FERRITIN |
| CAI8009523.1 | NAD(P)H NITROREDUCTASE YDJA-RELATED |
| CAI8009524.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8009525.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8009526.1 | MOXR FAMILY PROTEIN |
| CAI8009527.1 | |
| CAI8009528.1 | |
| CAI8009529.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8009530.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8009531.1 | |
| CAI8009532.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8009533.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8009534.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8009535.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8009536.1 | |
| CAI8009537.1 | |
| CAI8009538.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8009539.1 | UPF0734 PROTEIN DDB_G0273871/DDB_G0273177 |
| CAI8009540.1 | IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED |
| CAI8009541.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8009542.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8009543.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8009544.1 | SORBITOL DEHYDROGENASE |
| CAI8009545.1 | |
| CAI8009546.1 | |
| CAI8009547.1 | |
| CAI8009548.1 | |
| CAI8009549.1 | AMINOTRANSFERASE CLASS III |
| CAI8009550.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8009551.1 | URIDYLATE KINASE |
| CAI8009561.1 | ELONGATION FACTOR TS |
| CAI8009560.1 | ELONGATION FACTOR TS |
| CAI8009558.1 | ELONGATION FACTOR TS |
| CAI8009559.1 | ELONGATION FACTOR TS |
| CAI8009557.1 | ELONGATION FACTOR TS |
| CAI8009556.1 | ELONGATION FACTOR TS |
| CAI8009552.1 | ELONGATION FACTOR TS |
| CAI8009555.1 | ELONGATION FACTOR TS |
| CAI8009554.1 | ELONGATION FACTOR TS |
| CAI8009553.1 | ELONGATION FACTOR TS |
| CAI8009562.1 | ELONGATION FACTOR TS |
| CAI8009564.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8009563.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8009566.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8009565.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8009570.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8009569.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8009568.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8009567.1 | DNA POLYMERASE III SUBUNIT ALPHA |
