Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009571.1 | 54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL |
| CAI8009572.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8009573.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8009574.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8009577.1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
| CAI8009576.1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
| CAI8009575.1 | |
| CAI8009584.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009583.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009581.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009580.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009579.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009578.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009585.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009582.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009586.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8009587.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI8009588.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8009589.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8009590.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8009591.1 | |
| CAI8009592.1 | |
| CAI8009593.1 | |
| CAI8009594.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8009595.1 | CENTROMERE PROTEIN P |
| CAI8009596.1 | CENTROMERE PROTEIN P |
| CAI8009597.1 | CENTROMERE PROTEIN P |
| CAI8009598.1 | CENTROMERE PROTEIN P |
| CAI8009599.1 | |
| CAI8009601.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009602.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009600.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009603.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009604.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8009605.1 | |
| CAI8009607.1 | |
| CAI8009606.1 | |
| CAI8009612.1 | |
| CAI8009611.1 | |
| CAI8009610.1 | |
| CAI8009609.1 | |
| CAI8009608.1 | |
| CAI8009613.1 | |
| CAI8009614.1 | |
| CAI8009615.1 | |
| CAI8009616.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8009617.1 | UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) |
| CAI8009618.1 | |
| CAI8009619.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8009620.1 | ALDEHYDE DEHYDROGENASE |
