Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009721.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8009722.1 | THIAZOLE SYNTHASE |
| CAI8009723.1 | THIAZOLE SYNTHASE |
| CAI8009724.1 | THIAZOLE SYNTHASE |
| CAI8009725.1 | |
| CAI8009726.1 | |
| CAI8009727.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8009728.1 | SULFATASE MODIFYING FACTOR 1, 2 |
| CAI8009729.1 | PROTEIN TOLB HOMOLOG |
| CAI8009730.1 | |
| CAI8009731.1 | QUINOLINATE SYNTHETASE A |
| CAI8009732.1 | QUINOLINATE SYNTHETASE A |
| CAI8009733.1 | HTH-TYPE TRANSCRIPTIONAL REGULATOR |
| CAI8009736.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8009735.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8009734.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8009737.1 | |
| CAI8009738.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8009739.1 | BON DOMAIN-CONTAINING PROTEIN |
| CAI8009740.1 | |
| CAI8009741.1 | - |
| CAI8009742.1 | BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH |
| CAI8009743.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8009744.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8009745.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8009746.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8009747.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8009748.1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
| CAI8009749.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8009750.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8009753.1 | GABA-B RECEPTOR |
| CAI8009754.1 | GABA-B RECEPTOR |
| CAI8009751.1 | GABA-B RECEPTOR |
| CAI8009752.1 | GABA-B RECEPTOR |
| CAI8009755.1 | GABA-B RECEPTOR |
| CAI8009756.1 | |
| CAI8009757.1 | GOLGIN |
| CAI8009758.1 | |
| CAI8009759.1 | |
| CAI8009760.1 | DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 |
| CAI8009761.1 | |
| CAI8009762.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8009763.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8009764.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8009767.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8009766.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8009765.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8009768.1 | CYSTEINE DESULFURASE |
| CAI8009769.1 | MANNONATE DEHYDRATASE |
| CAI8009770.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
