Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009867.1 | DNA LIGASE 4 |
| CAI8009866.1 | DNA LIGASE 4 |
| CAI8009873.1 | DNA LIGASE 4 |
| CAI8009874.1 | DNA LIGASE 4 |
| CAI8009875.1 | DNA LIGASE 4 |
| CAI8009876.1 | |
| CAI8009877.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8009878.1 | EPOXIDE HYDROLASE |
| CAI8009879.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI8009880.1 | AMIDOHYDROLASE |
| CAI8009881.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8009882.1 | 5-OXOPROLINASE RELATED |
| CAI8009883.1 | 5-OXOPROLINASE RELATED |
| CAI8009884.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8009885.1 | ENOYL-COA HYDRATASE |
| CAI8009886.1 | ACETYLORNITHINE DEACETYLASE |
| CAI8009887.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8009888.1 | RECOMBINATION PROTEIN RECR |
| CAI8009889.1 | DNA REPAIR PROTEIN RECO |
| CAI8009890.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8009891.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8009892.1 | |
| CAI8009893.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8009898.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009897.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009896.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009894.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009895.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009900.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009899.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009901.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009902.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009903.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009904.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8009905.1 | THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC |
| CAI8009906.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8009907.1 | |
| CAI8009908.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8009909.1 | |
| CAI8009910.1 | COBALT-PRECORRIN-8 METHYLMUTASE |
| CAI8009911.1 | SIROHYDROCHLORIN FERROCHELATASE, CHLOROPLASTIC |
| CAI8009912.1 | COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE |
| CAI8009913.1 | SIROHEME SYNTHASE-RELATED |
| CAI8009914.1 | SIROHEME SYNTHASE-RELATED |
| CAI8009915.1 | COBALT-PRECORRIN-5A HYDROLASE |
| CAI8009916.1 | COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED |
| CAI8009917.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8009918.1 | |
| CAI8009934.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8009933.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
