Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009970.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8009972.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8009973.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8009974.1 | LIPOPROTEIN-RELATED |
| CAI8009975.1 | TRANSAMIDASE |
| CAI8009976.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8009977.1 | IDURONATE 2-SULFATASE |
| CAI8009978.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8009979.1 | IDURONATE 2-SULFATASE |
| CAI8009980.1 | GLYCOSYL HYDROLASE DIGH |
| CAI8009981.1 | N-ACETYLMURAMOYL-L-ALANINE AMIDASE |
| CAI8009982.1 | SERYL-TRNA SYNTHETASE |
| CAI8009984.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009985.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009986.1 | FORMIN-J |
| CAI8009983.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009987.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009988.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009989.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009991.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009990.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009992.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009993.1 | INVERTED FORMIN-2 |
| CAI8009994.1 | |
| CAI8009995.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8009996.1 | |
| CAI8009997.1 | |
| CAI8009998.1 | |
| CAI8009999.1 | |
| CAI8010000.1 | |
| CAI8010001.1 | SOLUTE CARRIER FAMILY 39 |
| CAI8010002.1 | SOLUTE CARRIER FAMILY 39 |
| CAI8010003.1 | SOLUTE CARRIER FAMILY 39 |
| CAI8010005.1 | SOLUTE CARRIER FAMILY 39 |
| CAI8010004.1 | SOLUTE CARRIER FAMILY 39 |
| CAI8010006.1 | PRE-MRNA-SPLICING FACTOR CWF18 |
| CAI8010008.1 | PRE-MRNA-SPLICING FACTOR CWF18 |
| CAI8010007.1 | PRE-MRNA-SPLICING FACTOR CWF18 |
| CAI8010010.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI8010009.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI8010011.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8010012.1 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
| CAI8010013.1 | |
| CAI8010017.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010016.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010015.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010014.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010018.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010019.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8010020.1 | ATP-DEPENDENT RNA HELICASE |
