Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010071.1 | |
| CAI8010072.1 | |
| CAI8010073.1 | COILED-COIL DOMAIN-CONTAINING 74A |
| CAI8010074.1 | TUBULIN-SPECIFIC CHAPERONE E |
| CAI8010075.1 | TUBULIN-SPECIFIC CHAPERONE E |
| CAI8010077.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8010076.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8010078.1 | TUBULIN-SPECIFIC CHAPERONE E |
| CAI8010079.1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
| CAI8010080.1 | APRATAXIN-RELATED |
| CAI8010082.1 | NEURALIZED |
| CAI8010081.1 | |
| CAI8010083.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8010087.1 | AAA DOMAIN-CONTAINING |
| CAI8010086.1 | AAA DOMAIN-CONTAINING |
| CAI8010084.1 | AAA DOMAIN-CONTAINING |
| CAI8010085.1 | AAA DOMAIN-CONTAINING |
| CAI8010088.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI8010089.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8010090.1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| CAI8010094.1 | PROTEIN FAM227B |
| CAI8010096.1 | PROTEIN FAM227B |
| CAI8010093.1 | PROTEIN FAM227B |
| CAI8010095.1 | PROTEIN FAM227B |
| CAI8010092.1 | PROTEIN FAM227B |
| CAI8010091.1 | PROTEIN FAM227B |
| CAI8010097.1 | |
| CAI8010098.1 | |
| CAI8010099.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8010101.1 | WD40 REPEAT PROTEIN |
| CAI8010100.1 | WD40 REPEAT PROTEIN |
| CAI8010102.1 | |
| CAI8010103.1 | PROTEIN TOLB HOMOLOG |
| CAI8010104.1 | UPF0182 PROTEIN SLL1060 |
| CAI8010105.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8010106.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8010107.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8010108.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8010109.1 | UNNAMED PRODUCT |
| CAI8010110.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8010111.1 | |
| CAI8010112.1 | |
| CAI8010113.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8010115.1 | AMINO ACID TRANSPORTER |
| CAI8010114.1 | AMINO ACID TRANSPORTER |
| CAI8010118.1 | NEDD4-BINDING PROTEIN 2 |
| CAI8010117.1 | NEDD4-BINDING PROTEIN 2 |
| CAI8010116.1 | NEDD4-BINDING PROTEIN 2 |
| CAI8010119.1 | |
| CAI8010120.1 |
