Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009771.1 | FORMAMIDASE C869.04-RELATED |
| CAI8009772.1 | BLR3294 PROTEIN |
| CAI8009773.1 | HEPARIN-SULFATE LYASE |
| CAI8009774.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8009775.1 | TRANSKETOLASE |
| CAI8009776.1 | BLL3975 PROTEIN |
| CAI8009777.1 | |
| CAI8009778.1 | GLYCOSYL HYDROLASE DIGH |
| CAI8009779.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8009781.1 | GUANYLYL CYCLASE |
| CAI8009782.1 | GUANYLYL CYCLASE |
| CAI8009780.1 | GUANYLYL CYCLASE |
| CAI8009784.1 | GUANYLYL CYCLASE |
| CAI8009783.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8009785.1 | |
| CAI8009786.1 | |
| CAI8009793.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009792.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009791.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009790.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009789.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009788.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009787.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009794.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009795.1 | DNA REPAIR ENDONUCLEASE XPF |
| CAI8009796.1 | |
| CAI8009797.1 | |
| CAI8009798.1 | ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE |
| CAI8009800.1 | |
| CAI8009799.1 | |
| CAI8009801.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8009804.1 | |
| CAI8009803.1 | |
| CAI8009802.1 | |
| CAI8009805.1 | |
| CAI8009806.1 | ALPHA-GLUCOSIDASE |
| CAI8009807.1 | ALPHA-GLUCOSIDASE |
| CAI8009808.1 | ALPHA-GLUCOSIDASE |
| CAI8009812.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009813.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009811.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009810.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009809.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009814.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009815.1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| CAI8009816.1 | |
| CAI8009817.1 | |
| CAI8009819.1 | |
| CAI8009818.1 | |
| CAI8009820.1 |
