Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010021.1 | |
| CAI8010022.1 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 |
| CAI8010023.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI8010024.1 | |
| CAI8010025.1 | |
| CAI8010029.1 | MASK PROTEIN |
| CAI8010026.1 | MASK PROTEIN |
| CAI8010030.1 | MASK PROTEIN |
| CAI8010031.1 | SOWAH (DROSOPHILA) HOMOLOG |
| CAI8010027.1 | |
| CAI8010028.1 | |
| CAI8010032.1 | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 |
| CAI8010033.1 | |
| CAI8010034.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8010035.1 | |
| CAI8010036.1 | |
| CAI8010037.1 | |
| CAI8010039.1 | |
| CAI8010038.1 | |
| CAI8010040.1 | |
| CAI8010041.1 | |
| CAI8010046.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010047.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010044.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010045.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010043.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010042.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010048.1 | GLUTAMINE-TRNA LIGASE |
| CAI8010049.1 | |
| CAI8010050.1 | |
| CAI8010051.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT |
| CAI8010052.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT |
| CAI8010053.1 | |
| CAI8010054.1 | |
| CAI8010056.1 | |
| CAI8010055.1 | |
| CAI8010062.1 | UNC-13-4A, ISOFORM B |
| CAI8010061.1 | UNC-13-4A, ISOFORM B |
| CAI8010060.1 | UNC-13-4A, ISOFORM B |
| CAI8010059.1 | UNC-13-4A, ISOFORM B |
| CAI8010058.1 | UNC-13-4A, ISOFORM B |
| CAI8010057.1 | |
| CAI8010063.1 | UNC-13-4A, ISOFORM B |
| CAI8010065.1 | |
| CAI8010064.1 | |
| CAI8010067.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8010066.1 | |
| CAI8010068.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8010069.1 | |
| CAI8010070.1 | SAM-DEPENDENT METHYLTRANSFERASE |
