Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8009073.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8009072.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8009071.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8009070.1 | |
| CAI8009075.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8009076.1 | |
| CAI8009077.1 | |
| CAI8009078.1 | UNCHARACTERIZED |
| CAI8009079.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8009080.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8009081.1 | |
| CAI8009082.1 | |
| CAI8009084.1 | SERINE / THREONINE RACEMASE FAMILY MEMBER |
| CAI8009085.1 | SERINE / THREONINE RACEMASE FAMILY MEMBER |
| CAI8009083.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8009086.1 | LAMIN DM0-RELATED |
| CAI8009087.1 | |
| CAI8009092.1 | |
| CAI8009089.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8009088.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8009090.1 | |
| CAI8009091.1 | |
| CAI8009093.1 | |
| CAI8009094.1 | |
| CAI8009095.1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
| CAI8009096.1 | |
| CAI8009097.1 | |
| CAI8009098.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8009099.1 | ENDORIBONUCLEASE YBEY, CHLOROPLASTIC |
| CAI8009100.1 | MODULATOR OF FTSH PROTEASE HFLC |
| CAI8009101.1 | |
| CAI8009102.1 | |
| CAI8009103.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8009104.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8009105.1 | UVRABC SYSTEM PROTEIN A |
| CAI8009106.1 | IDURONATE 2-SULFATASE |
| CAI8009107.1 | |
| CAI8009109.1 | |
| CAI8009108.1 | |
| CAI8009110.1 | |
| CAI8009111.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI8009112.1 | |
| CAI8009115.1 | EPSIN/ENT-RELATED |
| CAI8009116.1 | EPSIN/ENT-RELATED |
| CAI8009117.1 | EPSIN/ENT-RELATED |
| CAI8009113.1 | 3'-5' EXONUCLEASE ERI1-RELATED |
| CAI8009114.1 | 3'-5' EXONUCLEASE ERI1-RELATED |
| CAI8009119.1 | |
| CAI8009118.1 | |
| CAI8009120.1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH5 |
