Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8008424.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8008423.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8008422.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8008421.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8008425.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8008426.1 | |
| CAI8008427.1 | RIBONUCLEASE III |
| CAI8008428.1 | RIBONUCLEASE III |
| CAI8008429.1 | RIBONUCLEASE III |
| CAI8008430.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8008432.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8008431.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8008433.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8008434.1 | UPF0104 MEMBRANE PROTEIN MJ1595 |
| CAI8008435.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8008436.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8008437.1 | |
| CAI8008439.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8008438.1 | |
| CAI8008440.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8008442.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8008441.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8008445.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008444.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008443.1 | |
| CAI8008446.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008447.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008448.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008449.1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
| CAI8008450.1 | |
| CAI8008451.1 | |
| CAI8008452.1 | |
| CAI8008453.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8008454.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8008455.1 | |
| CAI8008456.1 | ENOYL-COA HYDRATASE |
| CAI8008457.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8008458.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8008459.1 | |
| CAI8008460.1 | GNAT FAMILY, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G00765)-RELATED-RELATED |
| CAI8008461.1 | ACYLPYRUVASE |
| CAI8008462.1 | SSL8005 PROTEIN |
| CAI8008463.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8008464.1 | |
| CAI8008465.1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| CAI8008466.1 | DYNACTIN SUBUNIT P25 |
| CAI8008467.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI8008468.1 | |
| CAI8008469.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8008470.1 |
