Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010421.1 | |
| CAI8010423.1 | SERINE/ARGININE RICH SPLICING FACTOR |
| CAI8010422.1 | SERINE/ARGININE RICH SPLICING FACTOR |
| CAI8010425.1 | |
| CAI8010424.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8010426.1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
| CAI8010427.1 | |
| CAI8010428.1 | |
| CAI8010429.1 | PROTEIN CBG17840 |
| CAI8010430.1 | |
| CAI8010431.1 | |
| CAI8010432.1 | |
| CAI8010433.1 | |
| CAI8010434.1 | |
| CAI8010435.1 | D-ALANYL-D-ALANINE CARBOXYPEPTIDASE |
| CAI8010436.1 | LON PROTEASE |
| CAI8010437.1 | DNA REPAIR PROTEIN RECO |
| CAI8010438.1 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
| CAI8010439.1 | SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ |
| CAI8010440.1 | |
| CAI8010441.1 | |
| CAI8010442.1 | |
| CAI8010443.1 | RIBONUCLEASE H1 |
| CAI8010445.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI8010444.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI8010446.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI8010447.1 | |
| CAI8010448.1 | BLL4140 PROTEIN |
| CAI8010449.1 | ABC TRANSPORTER PERMEASE PROTEIN MG189-RELATED-RELATED |
| CAI8010450.1 | |
| CAI8010451.1 | |
| CAI8010452.1 | SER/THR PROTEIN KINASE-TRB |
| CAI8010455.1 | ALPHA-AMYLASE FAMILY MEMBER |
| CAI8010454.1 | ALPHA-AMYLASE FAMILY MEMBER |
| CAI8010453.1 | ALPHA-AMYLASE FAMILY MEMBER |
| CAI8010456.1 | |
| CAI8010457.1 | |
| CAI8010459.1 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| CAI8010458.1 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| CAI8010460.1 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| CAI8010461.1 | REGULATOR OF SIGMA-E PROTEASE RSEP |
| CAI8010462.1 | |
| CAI8010463.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8010464.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010465.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8010466.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8010467.1 | METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED |
| CAI8010468.1 | ABC-TRANSPORTER METAL-BINDING PROTEIN |
| CAI8010470.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8010469.1 | DEHYDROGENASES, SHORT CHAIN |
