Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010321.1 | PHYTOCHROME-LIKE PROTEIN CPH1 |
| CAI8010322.1 | RESPONSE REGULATOR RCP1-RELATED |
| CAI8010323.1 | RESPONSE REGULATOR RCP1-RELATED |
| CAI8010324.1 | |
| CAI8010325.1 | |
| CAI8010326.1 | ALPHA-PROTEIN KINASE VWKA |
| CAI8010327.1 | |
| CAI8010328.1 | ABC TRANSPORTER B FAMILY |
| CAI8010329.1 | ABC TRANSPORTER B FAMILY |
| CAI8010330.1 | |
| CAI8010331.1 | |
| CAI8010332.1 | |
| CAI8010334.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| CAI8010333.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| CAI8010335.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 103 |
| CAI8010336.1 | LIPOYL SYNTHASE |
| CAI8010337.1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| CAI8010338.1 | MCT-1 PROTEIN |
| CAI8010340.1 | SERINE/THREONINE-PROTEIN KINASE SBK1 |
| CAI8010339.1 | SERINE/THREONINE-PROTEIN KINASE SBK1 |
| CAI8010341.1 | |
| CAI8010342.1 | MEF2B PROTEIN |
| CAI8010344.1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
| CAI8010343.1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
| CAI8010345.1 | |
| CAI8010346.1 | RETINOL DEHYDROGENASE |
| CAI8010348.1 | GLUTATHIONE SYNTHETASE |
| CAI8010347.1 | REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 |
| CAI8010349.1 | GLUTATHIONE SYNTHETASE |
| CAI8010350.1 | TRANSCRIPTION FACTOR MAF |
| CAI8010351.1 | UNCHARACTERIZED |
| CAI8010352.1 | - |
| CAI8010354.1 | OS01G0621700 PROTEIN |
| CAI8010353.1 | OS01G0621700 PROTEIN |
| CAI8010355.1 | OS01G0621700 PROTEIN |
| CAI8010357.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8010356.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8010358.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8010359.1 | SOLUTE CARRIER FAMILY 17 |
| CAI8010360.1 | SOLUTE CARRIER FAMILY 17 |
| CAI8010362.1 | CAMK FAMILY PROTEIN KINASE |
| CAI8010361.1 | CAMK FAMILY PROTEIN KINASE |
| CAI8010363.1 | PROTEIN PHOSPHATASE |
| CAI8010364.1 | LEUCINE-RICH REPEAT-CONTAINING |
| CAI8010366.1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| CAI8010365.1 | PROTEIN CBG05349 |
| CAI8010367.1 | TARGETING PROTEIN FOR XKLP2 |
| CAI8010368.1 | TARGETING PROTEIN FOR XKLP2 |
| CAI8010369.1 | FG-GAP REPEAT-CONTAINING PROTEIN |
| CAI8010371.1 |
