Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010370.1 | |
| CAI8010372.1 | |
| CAI8010373.1 | |
| CAI8010374.1 | |
| CAI8010375.1 | |
| CAI8010376.1 | |
| CAI8010377.1 | |
| CAI8010378.1 | |
| CAI8010379.1 | |
| CAI8010380.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8010381.1 | VALYL-TRNA SYNTHETASES |
| CAI8010382.1 | SHIKIMATE DEHYDROGENASE |
| CAI8010383.1 | CHORISMATE SYNTHASE |
| CAI8010389.1 | CHORISMATE SYNTHASE |
| CAI8010384.1 | CHORISMATE SYNTHASE |
| CAI8010388.1 | CHORISMATE SYNTHASE |
| CAI8010386.1 | CHORISMATE SYNTHASE |
| CAI8010387.1 | CHORISMATE SYNTHASE |
| CAI8010385.1 | CHORISMATE SYNTHASE |
| CAI8010390.1 | CHORISMATE SYNTHASE |
| CAI8010391.1 | CHORISMATE SYNTHASE |
| CAI8010392.1 | DNA RECOMBINATION PROTEIN RMUC |
| CAI8010393.1 | FERREDOXIN |
| CAI8010394.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8010395.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8010396.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8010397.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI8010398.1 | |
| CAI8010399.1 | THYMIDYLATE KINASE |
| CAI8010400.1 | KINASE-RELATED |
| CAI8010402.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8010401.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8010403.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010404.1 | |
| CAI8010405.1 | |
| CAI8010406.1 | 6-PHOSPHOGLUCONOLACTONASE-RELATED |
| CAI8010407.1 | L-ORNITHINE N(5)-MONOOXYGENASE-RELATED |
| CAI8010408.1 | UREASE ACCESSORY PROTEIN G |
| CAI8010409.1 | UREASE ACCESSORY PROTEIN F |
| CAI8010412.1 | UREASE |
| CAI8010411.1 | UREASE |
| CAI8010410.1 | UREASE |
| CAI8010413.1 | UREASE |
| CAI8010414.1 | UREASE |
| CAI8010417.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8010416.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8010415.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8010418.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8010419.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8010420.1 | E3 UBIQUITIN-PROTEIN LIGASE TRAIP |
