Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010621.1 | |
| CAI8010622.1 | |
| CAI8010623.1 | PROTEIN OF UNKNOWN FUNCTION DUF729 |
| CAI8010626.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| CAI8010625.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| CAI8010624.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| CAI8010627.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| CAI8010628.1 | ARMADILLO REPEAT-CONTAINING PROTEIN 1 |
| CAI8010629.1 | |
| CAI8010630.1 | |
| CAI8010631.1 | |
| CAI8010632.1 | |
| CAI8010634.1 | |
| CAI8010633.1 | |
| CAI8010635.1 | |
| CAI8010636.1 | |
| CAI8010637.1 | |
| CAI8010638.1 | |
| CAI8010640.1 | FORMATE DEHYDROGENASE 1 |
| CAI8010639.1 | FORMATE DEHYDROGENASE 1 |
| CAI8010641.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8010642.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8010644.1 | TRANSAMIDASE |
| CAI8010643.1 | TRANSAMIDASE |
| CAI8010645.1 | TRANSAMIDASE |
| CAI8010646.1 | TRANSAMIDASE |
| CAI8010647.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8010648.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8010649.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8010650.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8010651.1 | |
| CAI8010652.1 | FLAVOPROTEIN OXYGENASE |
| CAI8010653.1 | |
| CAI8010654.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010655.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8010658.1 | MYOTROPHIN |
| CAI8010657.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8010659.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8010656.1 | |
| CAI8010660.1 | |
| CAI8010661.1 | |
| CAI8010662.1 | |
| CAI8010663.1 | |
| CAI8010664.1 | |
| CAI8010665.1 | |
| CAI8010666.1 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
| CAI8010667.1 | RNA METHYLASE-RELATED |
| CAI8010668.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8010670.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8010669.1 | DEHYDROGENASES, SHORT CHAIN |
