Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010671.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8010672.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8010673.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8010674.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8010676.1 | |
| CAI8010675.1 | |
| CAI8010677.1 | |
| CAI8010678.1 | |
| CAI8010679.1 | |
| CAI8010680.1 | |
| CAI8010681.1 | |
| CAI8010682.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8010683.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 9 |
| CAI8010684.1 | |
| CAI8010685.1 | |
| CAI8010687.1 | KICSTOR COMPLEX PROTEIN KAPTIN |
| CAI8010686.1 | KICSTOR COMPLEX PROTEIN KAPTIN |
| CAI8010688.1 | KICSTOR COMPLEX PROTEIN KAPTIN |
| CAI8010690.1 | |
| CAI8010689.1 | |
| CAI8010691.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8010692.1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
| CAI8010693.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8010694.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8010695.1 | D-AMINOPEPTIDASE |
| CAI8010696.1 | |
| CAI8010697.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010698.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010704.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010705.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010702.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010703.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010700.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010699.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010701.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010708.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010706.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010707.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010709.1 | |
| CAI8010710.1 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
| CAI8010711.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8010712.1 | |
| CAI8010713.1 | |
| CAI8010714.1 | 50S RIBOSOMAL PROTEIN L3 GLUTAMINE METHYLTRANSFERASE |
| CAI8010718.1 | LD18447P |
| CAI8010717.1 | LD18447P |
| CAI8010716.1 | LD18447P |
| CAI8010715.1 | LD18447P |
| CAI8010719.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8010720.1 | ANTITOXIN HICB |
