Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8010769.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010767.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8010773.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010774.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010775.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8010776.1 | EPOXYQUEUOSINE REDUCTASE |
| CAI8010777.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8010778.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8010779.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8010780.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8010781.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8010782.1 | |
| CAI8010788.1 | THREONINE-TRNA LIGASE |
| CAI8010787.1 | THREONINE-TRNA LIGASE |
| CAI8010786.1 | THREONINE-TRNA LIGASE |
| CAI8010785.1 | THREONINE-TRNA LIGASE |
| CAI8010784.1 | THREONINE-TRNA LIGASE |
| CAI8010783.1 | THREONINE-TRNA LIGASE |
| CAI8010789.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010790.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010791.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010792.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010793.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010794.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8010795.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010803.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010799.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010801.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010800.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010802.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010798.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010797.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010796.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8010804.1 | RIBOFLAVIN SYNTHASE ALPHA CHAIN |
| CAI8010805.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8010806.1 | DCTP DEAMINASE |
| CAI8010807.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8010808.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8010809.1 | ATP SYNTHASE SUBUNIT A |
| CAI8010810.1 | SERUM RESPONSE FACTOR HOMOLOG |
| CAI8010812.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8010811.1 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| CAI8010813.1 | SEEDY PROTEIN A/C FAMILY MEMBER |
| CAI8010814.1 | |
| CAI8010819.1 | 5'->3' EXORIBONUCLEASE |
| CAI8010818.1 | 5'->3' EXORIBONUCLEASE |
| CAI8010816.1 | |
| CAI8010815.1 | |
| CAI8010817.1 | |
| CAI8010820.1 | 5'->3' EXORIBONUCLEASE |
