Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011071.1 | |
| CAI8011072.1 | |
| CAI8011073.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT |
| CAI8011074.1 | ADENYLOSUCCINATE LYASE |
| CAI8011075.1 | ADENYLOSUCCINATE LYASE |
| CAI8011076.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8011077.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURS |
| CAI8011078.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8011079.1 | RIBOSOMAL-PROTEIN-SERINE ACETYLTRANSFERASE |
| CAI8011080.1 | PBS LYASE HEAT-LIKE PROTEIN |
| CAI8011081.1 | UPF0644 PROTEIN PB2B4.06 |
| CAI8011082.1 | |
| CAI8011083.1 | |
| CAI8011084.1 | |
| CAI8011085.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8011086.1 | SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ |
| CAI8011088.1 | REGULATOR OF RPOS |
| CAI8011087.1 | REGULATOR OF RPOS |
| CAI8011089.1 | FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC |
| CAI8011090.1 | SULFUR CARRIER PROTEIN YEDF-RELATED |
| CAI8011091.1 | |
| CAI8011092.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8011093.1 | PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC |
| CAI8011094.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8011095.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8011096.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8011097.1 | THIOREDOXIN PEROXIDASE |
| CAI8011098.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8011099.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8011101.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8011100.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8011102.1 | |
| CAI8011103.1 | |
| CAI8011104.1 | AGSS FAMILY TRANSPORTER, SODIUM-ALANINE |
| CAI8011105.1 | RIBOSOMAL PROTEIN L27 |
| CAI8011106.1 | |
| CAI8011108.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8011107.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8011109.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8011110.1 | RIBONUCLEASE |
| CAI8011111.1 | |
| CAI8011112.1 | |
| CAI8011113.1 | TRNA SULFURTRANSFERASE |
| CAI8011114.1 | UVRABC SYSTEM PROTEIN A |
| CAI8011115.1 | |
| CAI8011117.1 | ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1 |
| CAI8011118.1 | MOLTING PROTEIN MLT-4 |
| CAI8011119.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8011116.1 | ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1 |
| CAI8011120.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
