Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011022.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8011021.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8011023.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8011024.1 | NUCLEOTIDE KINASE |
| CAI8011025.1 | NUCLEOTIDE KINASE |
| CAI8011028.1 | NUCLEOTIDE KINASE |
| CAI8011026.1 | NUCLEOTIDE KINASE |
| CAI8011027.1 | NUCLEOTIDE KINASE |
| CAI8011029.1 | METHIONINE AMINOPEPTIDASE |
| CAI8011030.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8011031.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8011032.1 | |
| CAI8011033.1 | RIBOSOMAL PROTEIN L17 |
| CAI8011034.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8011035.1 | RIBOSOMAL PROTEIN S9 |
| CAI8011036.1 | RIBOSOMAL PROTEIN S9 |
| CAI8011037.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8011038.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8011039.1 | FAD-DEPENDENT OXIDOREDUCTASE |
| CAI8011040.1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
| CAI8011049.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011044.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011047.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011045.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011046.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011048.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011043.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011042.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011041.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8011050.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8011051.1 | ACYL-COA DEHYDROGENASE |
| CAI8011052.1 | ACYL-COA DEHYDROGENASE |
| CAI8011053.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8011054.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI8011055.1 | GLUTAMATE--TRNA LIGASE |
| CAI8011056.1 | PROTEIN KINASE PRKA |
| CAI8011057.1 | PROTEIN KINASE PRKA |
| CAI8011058.1 | UNCHARACTERIZED |
| CAI8011059.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8011060.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8011061.1 | |
| CAI8011062.1 | |
| CAI8011063.1 | |
| CAI8011064.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8011065.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8011066.1 | NITROREDUCTASE MJ1384-RELATED |
| CAI8011067.1 | ENOYL-COA HYDRATASE |
| CAI8011068.1 | THYMOCYTE NUCLEAR PROTEIN 1 |
| CAI8011069.1 | GMP SYNTHASE-RELATED |
| CAI8011070.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
