Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011172.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011173.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011174.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011171.1 | |
| CAI8011175.1 | SH2 DOMAIN CONTAINING PROTEIN |
| CAI8011176.1 | |
| CAI8011177.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8011178.1 | SORTILIN RELATED |
| CAI8011179.1 | ALPHA-MANNOSIDASE |
| CAI8011180.1 | ALPHA-MANNOSIDASE |
| CAI8011181.1 | ALPHA-MANNOSIDASE |
| CAI8011182.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8011184.1 | |
| CAI8011183.1 | |
| CAI8011187.1 | SORTING NEXIN-4 |
| CAI8011186.1 | SORTING NEXIN-4 |
| CAI8011185.1 | SORTING NEXIN-4 |
| CAI8011189.1 | SORTING NEXIN-4 |
| CAI8011191.1 | SORTING NEXIN-4 |
| CAI8011190.1 | SORTING NEXIN-4 |
| CAI8011188.1 | SORTING NEXIN-4 |
| CAI8011192.1 | SORTING NEXIN-4 |
| CAI8011193.1 | LD33804P |
| CAI8011194.1 | |
| CAI8011195.1 | |
| CAI8011196.1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
| CAI8011197.1 | |
| CAI8011198.1 | |
| CAI8011199.1 | |
| CAI8011202.1 | |
| CAI8011201.1 | |
| CAI8011200.1 | |
| CAI8011203.1 | |
| CAI8011204.1 | |
| CAI8011205.1 | |
| CAI8011206.1 | |
| CAI8011207.1 | |
| CAI8011208.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8011209.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8011210.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8011211.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8011212.1 | |
| CAI8011213.1 | |
| CAI8011214.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED |
| CAI8011215.1 | |
| CAI8011216.1 | |
| CAI8011217.1 | |
| CAI8011218.1 | |
| CAI8011219.1 | |
| CAI8011225.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
