Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011321.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8011322.1 | BIFUNCTIONAL TH2 PROTEIN |
| CAI8011323.1 | 50S RIBOSOMAL PROTEIN L9 |
| CAI8011324.1 | TPR-DOMAIN CONTAINING PROTEIN |
| CAI8011325.1 | |
| CAI8011326.1 | ENOLASE |
| CAI8011329.1 | NADH DEHYDROGENASE |
| CAI8011328.1 | NADH DEHYDROGENASE |
| CAI8011327.1 | NADH DEHYDROGENASE |
| CAI8011330.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8011331.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 |
| CAI8011332.1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT ND4L |
| CAI8011333.1 | |
| CAI8011336.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8011335.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8011334.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8011337.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI8011338.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8011339.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8011341.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8011340.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8011342.1 | |
| CAI8011343.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8011349.1 | |
| CAI8011348.1 | |
| CAI8011345.1 | |
| CAI8011346.1 | |
| CAI8011347.1 | |
| CAI8011350.1 | |
| CAI8011344.1 | |
| CAI8011353.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011352.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011351.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011354.1 | |
| CAI8011355.1 | |
| CAI8011356.1 | |
| CAI8011357.1 | |
| CAI8011358.1 | |
| CAI8011359.1 | |
| CAI8011360.1 | |
| CAI8011361.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8011362.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8011363.1 | BACTERIAL HEMOLYSIN-LIKE PROTEIN |
| CAI8011364.1 | |
| CAI8011365.1 | |
| CAI8011366.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8011369.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8011368.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8011367.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8011370.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
