Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011421.1 | RENIN RECEPTOR |
| CAI8011425.1 | RAS-RELATED PROTEIN RAB |
| CAI8011423.1 | RAS-RELATED PROTEIN RAB |
| CAI8011424.1 | RAS-RELATED PROTEIN RAB |
| CAI8011422.1 | 20 KD NUCLEAR CAP BINDING PROTEIN |
| CAI8011426.1 | ZGC:153352 |
| CAI8011429.1 | ZGC:153352 |
| CAI8011428.1 | ZGC:153352 |
| CAI8011430.1 | ZGC:153352 |
| CAI8011427.1 | ZGC:153352 |
| CAI8011431.1 | |
| CAI8011433.1 | |
| CAI8011432.1 | CYSTEINE PROTEASE ATG4 |
| CAI8011434.1 | CYSTEINE PROTEASE ATG4 |
| CAI8011435.1 | CYSTEINE PROTEASE ATG4 |
| CAI8011436.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8011437.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8011438.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8011439.1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
| CAI8011440.1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
| CAI8011441.1 | |
| CAI8011442.1 | |
| CAI8011443.1 | SCHLAFEN |
| CAI8011444.1 | |
| CAI8011445.1 | |
| CAI8011446.1 | EXPRESSED PROTEIN |
| CAI8011447.1 | BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY |
| CAI8011448.1 | BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY |
| CAI8011449.1 | MIP11318P |
| CAI8011450.1 | MIP11318P |
| CAI8011451.1 | MIP11318P |
| CAI8011452.1 | |
| CAI8011453.1 | AMMECR1 HOMOLOG |
| CAI8011454.1 | AMMECR1 HOMOLOG |
| CAI8011455.1 | |
| CAI8011456.1 | UNCHARACTERIZED |
| CAI8011457.1 | UNCHARACTERIZED |
| CAI8011458.1 | CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN |
| CAI8011459.1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
| CAI8011460.1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
| CAI8011461.1 | PROTEASE U48 CAAX PRENYL PROTEASE RCE1 |
| CAI8011462.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8011463.1 | NUCLEOTIDE KINASE |
| CAI8011464.1 | NUCLEOTIDE KINASE |
| CAI8011465.1 | |
| CAI8011466.1 | EXPRESSED PROTEIN |
| CAI8011467.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8011468.1 | |
| CAI8011469.1 | THYMIDYLATE KINASE |
| CAI8011470.1 |
