Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011471.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8011472.1 | DRONGO, ISOFORM F |
| CAI8011473.1 | RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F |
| CAI8011474.1 | RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F |
| CAI8011475.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8011476.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8011478.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8011477.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8011479.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8011480.1 | |
| CAI8011481.1 | |
| CAI8011483.1 | |
| CAI8011482.1 | |
| CAI8011484.1 | |
| CAI8011485.1 | |
| CAI8011486.1 | |
| CAI8011492.1 | SORTILIN RELATED |
| CAI8011490.1 | SORTILIN RELATED |
| CAI8011494.1 | SORTILIN RELATED |
| CAI8011493.1 | SORTILIN RELATED |
| CAI8011491.1 | SORTILIN RELATED |
| CAI8011488.1 | SORTILIN RELATED |
| CAI8011487.1 | SORTILIN RELATED |
| CAI8011489.1 | SORTILIN RELATED |
| CAI8011495.1 | SORTILIN RELATED |
| CAI8011496.1 | PROTEIN SIDEKICK |
| CAI8011497.1 | |
| CAI8011498.1 | |
| CAI8011499.1 | |
| CAI8011500.1 | |
| CAI8011501.1 | |
| CAI8011502.1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| CAI8011503.1 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
| CAI8011504.1 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
| CAI8011506.1 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
| CAI8011505.1 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
| CAI8011507.1 | PROTEIN RER1 |
| CAI8011509.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011510.1 | |
| CAI8011508.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011511.1 | |
| CAI8011512.1 | |
| CAI8011513.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8011514.1 | |
| CAI8011515.1 | |
| CAI8011516.1 | |
| CAI8011517.1 | HYPOTHETICAL MEMBRANE SPANNING PROTEIN |
| CAI8011518.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8011519.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8011520.1 |
