Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011623.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8011622.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8011621.1 | |
| CAI8011620.1 | |
| CAI8011619.1 | |
| CAI8011626.1 | |
| CAI8011627.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8011628.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8011629.1 | |
| CAI8011630.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8011631.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8011632.1 | |
| CAI8011633.1 | CYSTEINE-RICH PDF MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8011634.1 | |
| CAI8011637.1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| CAI8011636.1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| CAI8011635.1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| CAI8011638.1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| CAI8011639.1 | FANCONI ANEMIA GROUP D2 PROTEIN |
| CAI8011640.1 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49 |
| CAI8011641.1 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49 |
| CAI8011642.1 | PINN |
| CAI8011645.1 | HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 |
| CAI8011646.1 | |
| CAI8011647.1 | |
| CAI8011644.1 | HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 |
| CAI8011643.1 | |
| CAI8011648.1 | HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 |
| CAI8011650.1 | UBIQUITIN |
| CAI8011649.1 | |
| CAI8011651.1 | |
| CAI8011652.1 | |
| CAI8011653.1 | UBIQUITIN |
| CAI8011654.1 | UBIQUITIN |
| CAI8011655.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B |
| CAI8011657.1 | TREHALASE |
| CAI8011656.1 | TREHALASE |
| CAI8011658.1 | TREHALASE |
| CAI8011659.1 | TREHALASE |
| CAI8011661.1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
| CAI8011660.1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
| CAI8011663.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8011662.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8011664.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8011665.1 | |
| CAI8011666.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI8011667.1 | |
| CAI8011668.1 | LP10445P |
| CAI8011669.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 |
| CAI8011670.1 |
