Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011721.1 | |
| CAI8011722.1 | |
| CAI8011723.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8011724.1 | |
| CAI8011725.1 | RAB11-FAMILY INTERACTING PROTEIN |
| CAI8011726.1 | RAB11-FAMILY INTERACTING PROTEIN |
| CAI8011727.1 | RAB11-FAMILY INTERACTING PROTEIN |
| CAI8011728.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8011729.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8011730.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8011731.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI8011738.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011739.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8011737.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011736.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8011735.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011734.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011732.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011733.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8011742.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8011741.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8011740.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8011743.1 | |
| CAI8011744.1 | TRANSAMIDASE |
| CAI8011745.1 | PEPTIDASE M20 |
| CAI8011747.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8011746.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8011748.1 | PARTNER OF SLD5 |
| CAI8011750.1 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
| CAI8011749.1 | |
| CAI8011752.1 | |
| CAI8011751.1 | |
| CAI8011753.1 | |
| CAI8011754.1 | |
| CAI8011755.1 | SER/THR PROTEIN KINASE-TRB |
| CAI8011756.1 | |
| CAI8011757.1 | |
| CAI8011758.1 | |
| CAI8011760.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8011759.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8011761.1 | |
| CAI8011762.1 | |
| CAI8011763.1 | |
| CAI8011764.1 | |
| CAI8011765.1 | |
| CAI8011766.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8011768.1 | |
| CAI8011767.1 | 60S RIBOSOMAL PROTEIN L29 |
| CAI8011769.1 | |
| CAI8011770.1 | AMINOPEPTIDASE |
