Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011821.1 | |
| CAI8011822.1 | |
| CAI8011823.1 | GH10160P |
| CAI8011824.1 | GH10160P |
| CAI8011825.1 | 2-PHOSPHOSULFOLACTATE PHOSPHATASE-RELATED |
| CAI8011826.1 | HEME-DEPENDENT PEROXIDASE YWFI-RELATED |
| CAI8011828.1 | QUINOLINATE SYNTHETASE A |
| CAI8011827.1 | QUINOLINATE SYNTHETASE A |
| CAI8011829.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8011830.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8011831.1 | PAREP8-RELATED |
| CAI8011832.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8011833.1 | RIBOSOMAL PROTEIN S7 |
| CAI8011834.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8011835.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8011836.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8011837.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8011838.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8011839.1 | |
| CAI8011840.1 | RIBOSOMAL PROTEIN L2 |
| CAI8011841.1 | |
| CAI8011842.1 | CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED |
| CAI8011843.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8011844.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8011845.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8011846.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8011847.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 |
| CAI8011848.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8011849.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI8011850.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8011851.1 | |
| CAI8011852.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8011853.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8011854.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8011855.1 | NUCLEOTIDE KINASE |
| CAI8011856.1 | METHIONINE AMINOPEPTIDASE |
| CAI8011857.1 | TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC |
| CAI8011858.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8011859.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8011860.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8011861.1 | |
| CAI8011862.1 | RIBOSOMAL PROTEIN L17 |
| CAI8011863.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8011864.1 | RIBOSOMAL PROTEIN S9 |
| CAI8011865.1 | |
| CAI8011866.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED |
| CAI8011867.1 | PROLINE-RICH ANTIGEN HOMOLOG-RELATED |
| CAI8011868.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8011869.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8011870.1 | FAD-DEPENDENT OXIDOREDUCTASE |
