Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011521.1 | N6-ADENOSINE-METHYLTRANSFERASE |
| CAI8011524.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8011523.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8011522.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8011525.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8011526.1 | BCDNA.GH03377 |
| CAI8011527.1 | SUA5 |
| CAI8011540.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011539.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011538.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011536.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011537.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011535.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011534.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011532.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011533.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011530.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011531.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011529.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011528.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8011541.1 | PROTEIN SMF |
| CAI8011542.1 | |
| CAI8011543.1 | DNA REPAIR PROTEIN RADA |
| CAI8011544.1 | INTERMEMBRANE PHOSPHOLIPID TRANSPORT SYSTEM BINDING PROTEIN MLAD-RELATED |
| CAI8011545.1 | PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC |
| CAI8011546.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8011547.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8011548.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8011549.1 | ARSENITE METHYLTRANSFERASE |
| CAI8011550.1 | - |
| CAI8011551.1 | - |
| CAI8011552.1 | |
| CAI8011553.1 | BIFUNCTIONAL PROTEIN HLDE |
| CAI8011554.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8011555.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8011556.1 | METHYLTRANSFERASE |
| CAI8011557.1 | OBG GTPASE FAMILY |
| CAI8011559.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8011558.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8011560.1 | |
| CAI8011561.1 | WD40 REPEAT PROTEIN |
| CAI8011562.1 | OXIDOREDUCTASE FAD/NAD(P)-BINDING DOMAIN PROTEIN |
| CAI8011563.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8011564.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8011566.1 | |
| CAI8011565.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8011567.1 | |
| CAI8011568.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8011569.1 | |
| CAI8011570.1 | ALCOHOL DEHYDROGENASE |
