Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8011371.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8011372.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8011373.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8011374.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8011375.1 | |
| CAI8011376.1 | |
| CAI8011377.1 | |
| CAI8011378.1 | |
| CAI8011379.1 | HOMOGENTISATE 1,2-DIOXYGENASE |
| CAI8011380.1 | HOMOGENTISATE 1,2-DIOXYGENASE |
| CAI8011381.1 | PREFOLDIN SUBUNIT 3 |
| CAI8011384.1 | EH DOMAIN |
| CAI8011385.1 | EH DOMAIN |
| CAI8011386.1 | EH DOMAIN |
| CAI8011383.1 | EH DOMAIN |
| CAI8011382.1 | |
| CAI8011387.1 | EH DOMAIN |
| CAI8011388.1 | |
| CAI8011389.1 | |
| CAI8011393.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
| CAI8011391.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
| CAI8011392.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
| CAI8011390.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG |
| CAI8011396.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011399.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011398.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011400.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011397.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011395.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011394.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011401.1 | HUNTINGTON DISEASE PROTEIN |
| CAI8011403.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8011402.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8011404.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| CAI8011405.1 | PROFILIN |
| CAI8011406.1 | |
| CAI8011407.1 | GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 |
| CAI8011408.1 | GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 |
| CAI8011410.1 | CALCIUM-BINDING PROTEIN 39-RELATED |
| CAI8011409.1 | CALCIUM-BINDING PROTEIN 39-RELATED |
| CAI8011411.1 | CALCIUM-BINDING PROTEIN 39-RELATED |
| CAI8011413.1 | WD REPEAT-CONTAINING PROTEIN 73 |
| CAI8011412.1 | WD REPEAT-CONTAINING PROTEIN 73 |
| CAI8011414.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8011418.1 | RENIN RECEPTOR |
| CAI8011417.1 | RENIN RECEPTOR |
| CAI8011416.1 | RENIN RECEPTOR |
| CAI8011415.1 | RENIN RECEPTOR |
| CAI8011420.1 | RENIN RECEPTOR |
| CAI8011419.1 | RENIN RECEPTOR |
