Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012171.1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| CAI8012172.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8012173.1 | CITRATE SYNTHASE |
| CAI8012174.1 | CITRATE SYNTHASE |
| CAI8012175.1 | CITRATE SYNTHASE |
| CAI8012176.1 | CITRATE SYNTHASE |
| CAI8012177.1 | |
| CAI8012178.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8012179.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8012180.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8012181.1 | FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN |
| CAI8012182.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8012183.1 | STRESS RESPONSE PROTEIN NHAX |
| CAI8012184.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8012185.1 | UVRABC SYSTEM PROTEIN A |
| CAI8012186.1 | BIFUNCTIONAL PROTEIN PYRR |
| CAI8012187.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8012188.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI8012189.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8012190.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8012191.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8012193.1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
| CAI8012192.1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
| CAI8012194.1 | |
| CAI8012195.1 | |
| CAI8012196.1 | CHROMATE REDUCTASE |
| CAI8012197.1 | TRNA SULFURTRANSFERASE |
| CAI8012198.1 | MICROSOMAL DIPEPTIDASE |
| CAI8012199.1 | PROTEIN PHOSPHATASE |
| CAI8012201.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI8012200.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI8012202.1 | |
| CAI8012203.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8012204.1 | AQUAPORIN TRANSPORTER |
| CAI8012205.1 | AQUAPORIN TRANSPORTER |
| CAI8012206.1 | |
| CAI8012207.1 | AQUAPORIN TRANSPORTER |
| CAI8012208.1 | |
| CAI8012209.1 | HEAT-SHOCK PROTEIN 20 FAMILY MEMBER |
| CAI8012210.1 | HEAT-SHOCK PROTEIN 20 FAMILY MEMBER |
| CAI8012211.1 | |
| CAI8012212.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE |
| CAI8012213.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8012215.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8012214.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8012216.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8012217.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8012218.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8012219.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8012220.1 | RESPIRATORY NITRATE REDUCTASE |
