Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012271.1 | OXIDOREDUCTASE FAD/NAD(P)-BINDING DOMAIN PROTEIN |
| CAI8012272.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8012273.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8012274.1 | PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED |
| CAI8012275.1 | |
| CAI8012276.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8012277.1 | NADH-QUINONE OXIDOREDUCTASE, E SUBUNIT |
| CAI8012278.1 | PROTOPORPHYRINOGEN OXIDASE |
| CAI8012279.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8012280.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8012281.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8012282.1 | PROTEIN SMF |
| CAI8012283.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8012284.1 | DNA REPAIR PROTEIN RECO |
| CAI8012286.1 | RECOMBINATION PROTEIN RECR |
| CAI8012285.1 | RECOMBINATION PROTEIN RECR |
| CAI8012289.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI8012288.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI8012287.1 | |
| CAI8012290.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8012291.1 | ENDORIBONUCLEASE YBEY, CHLOROPLASTIC |
| CAI8012295.1 | |
| CAI8012293.1 | |
| CAI8012292.1 | |
| CAI8012294.1 | |
| CAI8012296.1 | MODULATOR OF FTSH PROTEASE HFLC |
| CAI8012297.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8012298.1 | |
| CAI8012299.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8012300.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8012301.1 | ROTATIN |
| CAI8012302.1 | ALANINE AMINOTRANSFERASE |
| CAI8012303.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8012304.1 | CENTROSOMAL PROTEIN 2 |
| CAI8012305.1 | CENTROSOMAL PROTEIN 2 |
| CAI8012307.1 | UNCHARACTERIZED |
| CAI8012306.1 | P25 ALPHA-RELATED |
| CAI8012308.1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| CAI8012309.1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| CAI8012311.1 | IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX |
| CAI8012310.1 | |
| CAI8012312.1 | |
| CAI8012313.1 | |
| CAI8012318.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012319.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012317.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012316.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012315.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8012314.1 | |
| CAI8012320.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
